harpy.sh.create_voronoi_boundaries

harpy.sh.create_voronoi_boundaries#

harpy.sh.create_voronoi_boundaries(sdata, shapes_name='segmentation_mask_boundaries', output_shapes_name=None, radius=0, overwrite=False)#

Create Voronoi boundaries from the shapes element of the provided SpatialData object.

Given a SpatialData object and a radius, this function calculates Voronoi boundaries and expands these boundaries based on the radius.

Parameters:

  • sdata (SpatialData) – The spatial data object on which Voronoi boundaries will be created.

  • shapes_name (str (default: 'segmentation_mask_boundaries')) – The name of the shapes element in sdata used to derive Voronoi boundaries. Default is “segmentation_mask_boundaries”.

  • output_shapes_name (str | None (default: None)) – Name of the resulting shapes element that will be added to sdata.

  • radius (int (default: 0)) – The expansion radius for the Voronoi boundaries, by default 0. If provided, Voronoi boundaries will be expanded by this radius. Must be non-negative.

  • overwrite (bool (default: False)) – If True, overwrites the output_shapes_name if it already exists in sdata.

Return type:

SpatialData

Returns:

: Modified sdata object with the Voronoi boundaries created and possibly expanded.

Raises:

ValueError – If the provided radius is negative.