General tutorials

These tutorials are intended for users who are new to Harpy and want to learn the basics of working with spatial omics data.

• Technology-specific advice
• Scalable Spatial Transcriptomics Analysis with Harpy.
• Highly-multiplexed image analysis with Harpy
• Harpy support for InstanSeg segmentation model
• Run FlowSOM for pixel and cell clustering
• Generating single-cell representations from highly multiplexed images and integration with PyTorch
• Highly-multiplexed image analysis with Harpy and Kronos.
• Quality Control on IMC spatial proteomics with Harpy
• Benchmark results Harpy