Usage

Input data

Harpy includes several built-in-datasets. For example to load data from a Resolve Molecular Cartography experiment on mouse liver:

from harpy.datasets.registry import get_registry

registry=get_registry()
path_image = registry.fetch( "transcriptomics/resolve/mouse/20272_slide1_A1-1_DAPI.tiff" )
path_coordinates = registry.fetch("transcriptomics/resolve/mouse/20272_slide1_A1-1_results.txt")

And to download an example SpatialData object resulting from running the Harpy pipeline for transcriptomics:

import harpy as hp
sdata=hp.datasets.resolve_example()

🔍 Explore more built-in datasets in the Harpy documentation.

Jupyter notebooks

Check the notebooks in the tutorials section.