Advanced tutorials#
These tutorials are more advanced and require a deeper understanding of the Harpy API. They are intended for users who are already familiar with the basics of Harpy and want to learn more about specific features or use cases.
- Quality Control on in-silico spatial proteomics with Harpy
- Interactive napari cell annotation on spatial proteomics
- Interactive napari pixel annotation on spatial proteomics
- Harpy distance calculations
- Working with multiple samples (and coordinate systems)
- Rasterize and vectorize
- Shallow feature extraction using
Harpy. - Basic Spatial Transcriptomics Analysis with Harpy
- Example spatial transcriptomics (Xenium)
- Understanding Dask behaviour in SpatialData